BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB002H06SP1|AL425035
(173 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1183 316 7e-87
>3x_Contig1183
Length = 3176
Score = 316 bits (159), Expect = 7e-87
Identities = 169/171 (98%), Gaps = 1/171 (0%)
Strand = Plus / Minus
Query: 1 atccatcctatatatttatattattattttaatttattcagataggatagattcgaacta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1496 atccatcctatatatttatattattattttaatttattcagataggatagattcgaacta 1437
Query: 61 actaactctttctcccaaagaaagctgcctaacccttcggcctctatctgttattatata 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1436 actaactctttctcccaaagaaagc-gcctaacccttcggcctctatctgttattatata 1378
Query: 121 agcatatttatattatttatttcaatcaaatatatattatatatttgatta 171
|||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1377 agcatatttatattatttatttcaatcaaatatatattatatattttatta 1327
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2628
Number of Sequences: 1807
Number of extensions: 2628
Number of successful extensions: 366
Number of sequences better than 1.0e-20: 1
length of query: 173
length of database: 10,358,551
effective HSP length: 15
effective length of query: 158
effective length of database: 10,331,446
effective search space: 1632368468
effective search space used: 1632368468
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.4 bits)
S2: 49 (98.0 bits)